2003-on FX4's have the normal black Ranger shifter with the tall rubber boot.
The 2002 FX4 and 2003-2006 FX4 Level II have the chrome transmission shifter with the leather boot. 2004-on Level II manuals have a single shifter and leather boot in the black dual cupholder bezel. These are pictures of the 2002~2003 twin shifter version with the double bezel:
This is a Ranger that has been converted to the Level II shifter: