how should i go about removing the fender, ive never had one off before but i need to realign it with the door, im aware of the bolts under the hood and the one inside the door jam but is there any others hidden i should know about? do i need to remove the corner light and inner fender to?

 

header panel needs to come off...fender liner needs to come out and there are bolts on the bottom of the fender too

 

sorry but what is the header panel?

 

where the lights are

 

The panel that your headlights mount too.
If you need to adjust your door jamb, move the door first. Fenders suck cause there are a ton of bolts.

 

x2 i hate putting fenders on but its part of my job lol

 

well the tire bent it a little under the back of the flare by the door, it pushed it up and out maybe 1/8th of a inch or so, so i would rather try to move the fender its not really noticable but the body lines were perfect before and now the fender sits up a bit, the top seam by the hood is unchanged it is just from the mirror down.

 

You've bent the sheet metal, there is no going back. you'll move your fender and fix your door gap, then your hood gap will be off.
Unless you bend it back, just leave it as is or buy a new fender.